How do new species of frogs evolve?

How do similar animals evolve to the point of forming different species that are no longer able to interbreed? This question has puzzled evolutionary biologists ever since Darwin.

Christophe Dufresnes, Nanjing Forestry University and Pierre-André Crochet, University of Montpellier

Recently discovered, the spiny toad hybridizes only to a limited extent with its cousin, the common toad, in southern France. Christophe Dufresnes, Courtesy of the author

Some imagine a rapid process resulting from changes in a few key genes related to mate selection or ecology: hybridization then becomes detrimental, because the offspring—even if viable—will be neither attractive nor well-adapted to their parents’ environments due to their intermediate traits.

Others see this instead as the result of gradual genomic differentiation: when populations remain isolated for millions of years, their gene pools diverge due to mutation and gradually become incompatible, leading to developmental and fertility problems in hybrids.

Hybrid Zones as Laboratories

To compare these two major hypotheses, we examined amphibian hybrid zones: geographic regions where genetic lineages of toads, frogs, and tree frogs—which have diverged to varying degrees—meet and interbreed if compatible. The idea is to measure the degree of divergence required to limit hybridization, and the number of genes potentially responsible.

To do this, DNA had to be collected from natural populations, which required a considerable field effort involving numerous trips across Europe, North Africa, and the Middle East, with the help of close collaborators abroad over the course of nearly five years. These samples were then analyzed using tools known as “genomic” tools, which provide access to thousands of regions of the genome.

The rewards were significant: the analyses first led to the discovery of new species and clarified many questions regarding the evolution of Europeanherpetofauna. In particular, the application of so-called “molecular clocks” to DNA sequences made it possible to date the time when the species first appeared—that is, the time when they diverged from their relatives. In total, nearly forty natural geographic transitions were compared, representing all known genera on the Old Continent.

Genetic analyses have shed light on the diversity and evolution of many groups of amphibians. Among the alytes (small toads in which the male carries the eggs until they are ready to hatch), we were able to discover a new species for France.
Christophe Dufresnes, Courtesy of the author

It takes time to make a new frog

The results, published in PNAS, show that it is the entire genome—which, as it diverges over millions of years, gradually becomes incompatible between emerging species—and not just a few key genes. Older lineages therefore have more difficulty hybridizing than younger lineages, because a greater number of genes have lost their compatibility.

Thus, lineages that became isolated during the most recent ice ages are still able to hybridize without difficulty, and evidence of this can be found over hundreds of kilometers. This is a sign that their genomes, which remain very similar, have lost none of their compatibility. This is particularly evident in the Iberian and French forms of the spotted pealytoad, which hybridize throughout Catalonia (see figure).

The Catalan coast is a place where species meet! But the consequences are different for the pelodytes, where the Iberian (red) and French (blue) lineages interbreed very well, whereas for the alytes, they interbreed only over a few kilometers.
Christophe Dufresnes, Courtesy of the author

Several million years later, however, genetic exchange is much more limited. For example, the alytes accoucheurs and almogavarre interbreed only within a few kilometers (see figure). This is because hundreds of genes have become incompatible, and together, they reduce the viability and fertility of hybrids. Researchers call these “barrier genes” because they are the cause of reproductive barriers.

Speciation in amphibians. Genetic incompatibilities gradually develop as lineages diverge. Thus, genomes remain compatible at first, but then barrier genes (which cause problems in hybrids) accumulate to the point where they eventually become incompatible, and hybridization no longer occurs. They can then be classified as species in the taxonomic sense.
Christophe Dufresnes, Provided by the author

At first, we make mistakes

Since they are initially maintained by primarily genetic mechanisms (incompatibilities at numerous genes) that take millions of years to develop, amphibian species therefore evolve relatively slowly. Otherwise, however, they remain identical to us: same ecology, same morphology, same mating calls. These are referred to as “cryptic” species, identifiable only through molecular tools.

But since they still look very much alike, these cryptic species continue to attempt to hybridize when they encounter one another—and thus, mistakenly. It will take more time for sufficiently distinct external differences to evolve, so that they can avoid mating with the wrong partner.

Young tree frog species have remained similar despite incompatibilities between their genomes. As a result, unsuccessful hybridizations are common. It is only later, over the course of evolution, that notable differences emerge, such as in coloration and mating calls.
Christophe Dufresnes, Courtesy of the author

A New Approach to Classifying Biodiversity

By demonstrating that species formation is a gradual process that can be quantified at the genetic level, the study paves the way for new concepts for categorizing evolutionary lineages into subspecies or species.

More specifically, when the divergence is less than two million years, frogs and toads remain compatible and therefore correspond, at best, to subspecies. It is only when the divergence exceeds five million years that we can be almost certain we are dealing with true species. In between, there is a “gray area,” where lineages can nevertheless be classified by examining the number of barrier genes that have already accumulated.

With hundreds of species being discovered each year around the world, this type of standardized approach should help establish more objective—and therefore more stable—taxonomic lists for amphibians, as well as for all animal groups, which is necessary for determining which species should be prioritized for protection.The Conversation

Christophe Dufresnes, Professor of Zoology, Nanjing Forestry University and Pierre-André Crochet, Research Director, University of Montpellier

This article is republished from The Conversation under a Creative Commons license. Readthe original article.